Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LYDYIKGTVTTITPEYIVVEAGQIGYQIITGNPF-SFQRLEGTEAQVFLYQHVREDNISLFGFQTTEERYLFKKLLSVSGIGPKSALAIIASGDVVPLISAIESEDDVYLTKFPSVGKKTARQIILDLKGKLADVVASEIVYVAPENDMVAGLSPQLEEAVLALEALGYSTRELKKVIPKLAKEADLTSDAYIKLALQLMTK
1IXR Chain:A ((1-135))
MIRYLRGLVLKKEAGGFVLLAGGVGFFLQAPTPFLQALE-EGKEVGVHTHLLLKEEGLSLYGFPDEENLALFELLLSVSGVGPKVALALLSALPPRLLARALLEGDARLLTSASGVGRRLAERIALELKGKVPPHL------------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1IXR.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -93024 for 1019 contacts (-91.3/contact) +
2D Compatibility (PS) -14791 + (NN) -6380 + (LL) 6240
1D Compatibility (HY) -8800 + (ID) 2350
Total energy: -119105.0 ( -116.88 by residue)
QMean score : 0.472
(partial model without unconserved sides chains):
PDB file :
Tito_1IXR.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1IXR-query.scw
PDB file :
Tito_Scwrl_1IXR.pdb
: