Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MFGFGNKDIGIDLGTANTLVYMKGKG-IVLREPSVVAMKKDT------QEIVAVGSDAKNMIGRTPGNIVAIRPMKDGVIADYDTTAAMMKYYIQKAGKSVNASKPRVMICVPSGITGVEKRAVIDAT-RQAGAKDAFTIEEPFAAAIGAGLPV---GEPTGSMVVDIGGGTTEVAVISLGGIVTS--RSVRTAGDDLDEVIINYIRKKYNL---LIGDRTAEAIKMEIGSASPKGLDL-SPF---------SIRGRDLVTGLPKTIEITPEEI---SEALADT------VAAIIDAVKGTLENTPPELSADIMDKGIVLTGGGALLRNLDTVISEETKMPV--------------------IIADEPLDCVAIGTGKALENMDMYKRKKMN |
1K8K Chain:A ((3-388)) | ---GRLPACVVDCGTGYTKLGYAGNTEPQFIIPSCIAIKE--VMKGVDDLDFFIGDEAIEK-----PTYATKWPIRHGIVEDWDLMERFMEQVIFKYLRA-EPEDHYFLLTEPPLNTPENREYTAEIMFESFNVPGLYIAVQAVLALAASWTSRQVGERTLTGTVIDSGDGVTHVIPVAEGYVIGSCIKHIPIAGRDITYFIQQLLRDREVGIPPEQSLETAKAVKERYSYVCPDLVKEFNKYDTDGSKWIKQYTGINAISKKEFSIDVGYERFLGPEIFFHPEFANPDFTQPISEVVDEVIQNCPIDVRRPLYKN-IVLSGGSTMFRDFGRRLQRDLKRTVDARLKLSEELSKPKPIDVQVITHHMQRYAVWFGGSMLASTP--------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1K8K.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -107698 for 2490 contacts (-43.3/contact) +
2D Compatibility (PS) -33840 + (NN) -9342 + (LL) 852
1D Compatibility (HY) -8800 + (ID) 2850
Total energy: -161678.0 ( -64.93 by residue)
QMean score : 0.453
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