Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPEMPEVENVRATLQELVPGKKIDQVIVRVPKMIVSTPPDE--FVHMLVGQEIEGVRRRGKFLLFDLTNCTILSHLRMEGKFRLMDENEEVSKHTHIIFHFEDHTELRFLDVRKFGTMEVTNKYGEGETRSIKKLGPEPLTQAFTLTDFATGVKKTSRAIKTALLDQKLVAGVGNIYADEICFEAKVRPERAANSLSDKEIKRIFKATKSIMTEAVALGGSTVRTYVNSQGKLGQYQNKLKVYGKTDEPCVVCGTPIEKIKLNGRGTHFCPNCQK
3U6M Chain:A ((1-273))
-PQLPEVETIRRTLLPLIVGKTIEDVRIFWPN-IIRHPRDSEAFAARMIGQTVRGLERRGKFLKFLLDRDALISHLRMEGRYAVASALEPLEPHTHVVFCFTDGSELRYRDVRKFGTMHVYAKEEADRRPPLAELGPEPLSPAFSPAVLAERAVKTKRSVKALLLDCTVVAGFGNIYVDESLFRAGILPGRPAASLSSKEIERLHEEMVATIGEAVM---------------------HLYVYGRQGNPCKRCGTPIEKTVVAGRGTHYCPRCQR
General information:
TITO was launched using:
RESULT:
Template:
3U6M.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -104728 for 2017 contacts (-51.9/contact) +
2D Compatibility (PS) -26707 + (NN) -10717 + (LL) 1060
1D Compatibility (HY) -21200 + (ID) 5900
Total energy: -168192.0 ( -83.39 by residue)
QMean score : 0.465
(partial model without unconserved sides chains):
PDB file :
Tito_3U6M.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3U6M-query.scw
PDB file :
Tito_Scwrl_3U6M.pdb
: