Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMNVTIYDVAREANVSMATVSRVVNGNPNVKPVTRKKVLDVINQLGYRPNAVARGLASKRTTTVGVIIPDISNVFYAELARGIEDIATMYKYNIILSNSDENEDKELQVLNTLLGKQVDGIIYMGERISEQL---QEEFDRSPAPVVLAGAVDMENKFASVNIDYK-QATKEAVKRFVDNGHKQIAFVSGSLNEPVNREMKLAGYKEALEEAGISYQEDYIIEAKYNYNAGVKVWAELSALSKKPNAVVVADDELAIGILNAALDAGIKVPEDLEVMTSNNTKLTLMSRPQLSTIVQPLYDIGAVAMRLLTKLMTSEEVDEKTVILPHSEKLRGTTKEKK
2PUB Chain:A ((2-304))---TIKDVAKRANVSTTTVSHVINKTRFVAEETRNAVWAAIKELHYSPSAVARSLKVNHTKSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLILGNAWNNLEKQRAYLSMMAQKRVDGLLVMCSEYPEPLLAMLEEYRHIPMVVMDWG--EAKADFTDAVIDNAFEGGYMAGRYLIERGHREIGVIPGPL-EANTGAGRLAGFMKAMEEAMIKVPESWIVQGDFEPESGYRAMQQILSQPHRPTAVFCGGDIMAMGALCAADEMGLRVPQDVSLIGYDNVRNARYFTPALTTIHQPKDSLGETAFNML------------------------------


General information:
TITO was launched using:
RESULT:

Template: 2PUB.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -147008 for 2442 contacts (-60.2/contact) +
2D Compatibility (PS) -33274 + (NN) -19692 + (LL) 2764
1D Compatibility (HY) -18400 + (ID) 4750
Total energy: -220360.0 ( -90.24 by residue)
QMean score : 0.473

(partial model without unconserved sides chains):
PDB file : Tito_2PUB.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-2PUB-query.scw
PDB file : Tito_Scwrl_2PUB.pdb: