Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNKVALVTGSSRGLGREIAIALAKEGYDIAVNFSRNRKKAEEVQQEIEQLGRKCVIFKANVGDVEKVRELFKAVDEEFGRLDIFINNAASGVLRPLMELEESHWDWTMNINAKALLFAGQEAAKLMQRHQSGKIISLSSIGSIRYLENYTTVGVSKAAVESLTRYLAVELAPFGIAVNAVSGGLIETDALNHFPNREELLKDAVSKTPAGRMIEPNDLVNAVLFLASEKADMIRGQTILVDGGRTLLV
4IBO Chain:D ((27-266))
--RTALVTGSSRGLGRAMAEGLAVAGARILINGTDPSRVAQTVQ-EFRNVGHDAEAVAFDVTSESEIIEAFARLDEQGIDVDILVNNAGIQFRKPMIELETADWQRVIDTNLTSAFMIGREAAKRMIPRGYGKIVNIGSLTSELARATVAPYTVAKGGIKMLTRAMAAEWAQYGIQANAIGPGYMLTDMNQALIDNPEFDAWVKARTPAKRWGKPQELVGTAVFLSASASDYVNGQIIYVDGG-----
General information:
TITO was launched using:
RESULT:
Template:
4IBO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -113372 for 2041 contacts (-55.5/contact) +
2D Compatibility (PS) -26518 + (NN) -16074 + (LL) 944
1D Compatibility (HY) -12400 + (ID) 4150
Total energy: -171570.0 ( -84.06 by residue)
QMean score : 0.595
(partial model without unconserved sides chains):
PDB file :
Tito_4IBO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4IBO-query.scw
PDB file :
Tito_Scwrl_4IBO.pdb
: