Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKHLFKLDPAKNLPTNDVTKLIHSGTDGFIIGGTDNVQIEAVQNLYELLVETDLPIFLEISNESMILPEADHFLIPVVLNTENSKWTHGLHKELIKEMGEFIPWKRVTSEGYVILNKDAKVAHLTEAKTDLTDEDIVAYARLAENIFHLPIFYVEYSGM-YGDPEVVRKASAALSNTKFWYGGGIRSKEQAAEMAKYADTIIVGNIIYEDLEKALETATIFRKKTV
3VZX Chain:A ((7-227))
WKHVFKLDPNKDLPDEQLEILCESGTDAVIIGGSDGVTEDNVLRMMSKVRRFLVPCVLEVSAIEAIVPGFDLYFIPSVLNSKNADWIVGMHQKAMKEYGELMSMEEIVAEGYCIANPDCKAAALTEADADLNMDDIVAYARVS-ELLQLPIFYLEY-SGVLGDIEAVKKTKAVLETSTLFYGGGIKDAETAKQYAEHADVIVVGNAVYEDFDRALKTVAAVKG---
General information:
TITO was launched using:
RESULT:
Template:
3VZX.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -164571 for 1859 contacts (-88.5/contact) +
2D Compatibility (PS) -23628 + (NN) -7823 + (LL) 384
1D Compatibility (HY) -22400 + (ID) 4850
Total energy: -222888.0 ( -119.90 by residue)
QMean score : 0.638
(partial model without unconserved sides chains):
PDB file :
Tito_3VZX.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3VZX-query.scw
PDB file :
Tito_Scwrl_3VZX.pdb
: