Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGAKKPLFEVIASEIKDSINRDEYKTGMLMPNETALQEIFSSSRTTIRRAVDLLVEEGLVVRKNGVGLYVQP-KLTSQNILEMTGVMKTDTNENLKKDIKDFYIRKAGKFYAEKFGIKENELVYSIKFVQKSENGV-TLDRLILPLSLYPDLQAKDF-QIINIIELVNSGKYKLFELEQELQLILAGNEQIKNMHINENDPVFKLSSVFYAENEMPIAIQYHYEDAESTKYVVDFN
3EDP Chain:A ((7-236))
---KKPLFEVIASKIKDSINRDEYKTG--MPNETALQEIYSSSRTTIRRAVDLLVEEGLVVRKNGVGLYVQPKLTAQ-NILEMTGVMKN-----LKKDIKDFYIRKAGKFYAEIFGMKENELVYSIKFVQKS-EHGATLDRLILPLGLYPDLQAKDFQIINIIELVNS-GKYKLFELEQELQLILAGNEQIKNMHLNENDPVFKLSSVFYAENDMPIAIQYHYEDAESTKYVVDFN
General information:
TITO was launched using:
RESULT:
Template:
3EDP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -74907 for 1585 contacts (-47.3/contact) +
2D Compatibility (PS) -23479 + (NN) -2031 + (LL) 680
1D Compatibility (HY) -30400 + (ID) 9850
Total energy: -139987.0 ( -88.32 by residue)
QMean score : 0.474
(partial model without unconserved sides chains):
PDB file :
Tito_3EDP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3EDP-query.scw
PDB file :
Tito_Scwrl_3EDP.pdb
: