Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKVAISGGGTGGHVYPALALIRELKKSHPEAEFLYIGTEKGLEAGIVKREGIPFEAIEITGFKRSLSLENIKTVMRFLSGAKKSKQILRDFKPDVVIGTG-GYVCGPVVYAAAKLKIPTLIHEQNSVAGLTNKFLSRYTDKVAICFEEVSDSFASE--------------KIVFTGNPRASEVVGVD-SEGALEAYGLVSGKPTVLVFGGSRGARGVNEAVEAVLPEWNNRDFQLLYVTGDVHYEKIKDSLAELNLGNHISVQPFIYDMPKILNAVTLVVSRAGATTLAELTALGVPSILIPSPYVTANHQENNARALEKNNAAIVITEAELKNTDLMATVDSILNDEAKLNSMKLSAKQMGRPDAAAKLVEAVLSIMK-- |
1F0K Chain:A ((7-357)) | KRLMVMAGGTGGHVFPGLAVAHHLMAQGW--QVRWLGTADRMEADLVPKHGIEIDFIRISGLRGKGIKALIAAPLRIFNAWRQARAIMKAYKPDVVLGMGG-YVSGPGGLAAWSLGIPVVLHEQNGIAG------------------LTNKWLAK-IATKVMQAFPGAFPNAEVVGNPVRTDVLALPL---PQQRLAGREGPVRVLVVGGSQGARILNQTMPQVAAKLG-DSVTIWHQSGKGSQQSVEQAYAEAGQPQH-KVTEFIDDMAAAYAWADVVVCRSGALTVSEIAAAGLPALFVPFQH-KDRQQYWNALPLEKAGAAKIIEQPQLSVDAVANTLAGWSRETLLTMAERARAA--SIPDATERVANEVSRVARAL |
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General information:
TITO was launched using:
| RESULT:
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Template: 1F0K.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -183047 for 2904 contacts (-63.0/contact) +
2D Compatibility (PS) -36547 + (NN) -15906 + (LL) 2284
1D Compatibility (HY) -17200 + (ID) 4950
Total energy: -255366.0 ( -87.94 by residue)
QMean score : 0.605
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