Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKVLVFAAFIVLFSFSFLSTGLTAQAALKDGTYSVDYTVIQGDSDSASMANDYFDKPATVTVNGGKSTVSLQVNHSKWITGLWVEGNAVSVTSKNASSDTRKVSFPVSTLSNPVNAKIKVDIDDDDLNYHHEYQIKLRFDEGSAKALAGAVKSSDNNTTTPATKSDSSNKVTNPKSSDSSQMFLYGIIFVATGAGLILLKRRAIFK
3RTL Chain:A ((6-114))
-------------------------------DLQDTKYVVYESVENNESMMDTFVKHPIKTGMLNGKKYMVMETTNDDYWKDFMVEGQRVRTISKDAKNNTRTIIFPYVEGKTLYDAIVKVHV--KTIDYDGQYHVRIVDKE-----------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
3RTL.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -49627 for 735 contacts (-67.5/contact) +
2D Compatibility (PS) -12581 + (NN) -7952 + (LL) 6412
1D Compatibility (HY) -8000 + (ID) 1200
Total energy: -72948.0 ( -99.25 by residue)
QMean score : 0.540
(partial model without unconserved sides chains):
PDB file :
Tito_3RTL.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3RTL-query.scw
PDB file :
Tito_Scwrl_3RTL.pdb
: