Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSKPKIVILGAGYGGLKTLRKLQQRNLEAEIVLVNKNDYHHETT-WLHEAAAGTIEP-E-KLMYPLDKVVNDTKTTF-IQDTVVKINKDEKTVTLD-----ANGDISYDYLLIALGSEAETFGISGLK-EYAFTITSVESVKKIRAHIEAQFAKWKTDPRDELLTIIVGGAGFTGIEFLGELTNRIPELVKQYDVPREKVRIYCMEAAPKVLPQFDAKLVDYGVGVLEDRGVEFHVGKPVKEATADG-----------------------VKYAESENEVREIKAATIIWAAGVRGNSVIE-ASGFE-AGRGRVKVNNNLTVPGNEEILIVGDCSLIINPANDR-PFPPTAQIAMQQADVAAVNLAKLVKGETDLQDFVYHEKGTVCSLGDNDAIGVVFGKNLKGYPASVMKKVIDDRALLLIGGSGVLASKGKFKFYK |
| 3NTD Chain:A ((1-338)) | --MKKILIIGGVAGGASAAARARRLSETAEIIMFERGEYVSFANCGLPYHISGEIAQRSALVLQTPESFKARFNVEVRVKHEVVAIDRAAKLVTVRRLLDGSEYQESYDTLLLSPGAAPIVPPIPGVDNPLTHSLRNIPDMDRILQTIQM----------NNVEHATVVGGGFIGLEMMESLHHL-------------GIKTTLLELADQVMTPVDREMAGFAHQAIRDQGVDLRLGTALSEVS-YQVQTHVASDAAGEDTAHQHIKGHLSLTLSN--G-ELLETDLLIMAIGVRPETQLARDAGLAIGELGGIKVNAMMQT-SDPAIYAVGDAVEEQDFVTGQACLVPLAGPANRQGRMAADNMFGR----------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3NTD.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -180628 for 2498 contacts (-72.3/contact) +
2D Compatibility (PS) -32389 + (NN) -9869 + (LL) 5660
1D Compatibility (HY) -13600 + (ID) 3300
Total energy: -234126.0 ( -93.73 by residue)
QMean score : 0.557
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