Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | VKKYFITIMILLFGALSLSACQKDDEVENSSPPKVDLKNEIPIILIHGSGGDTHSLDE-MADH-LMNKYKSSNEAMSM-SINSNGKIAYQGALTKDAKRPIIKFGFDQNQATPDDWSKWLKIAM-EDLKSRYGFTQM-DGVGHSNGGLALTYFAEDYSNDNAVPTLRKLVAIGSPFNDLDPDDNG-DGLAFNKLPSNTPQL-DYFIDKKTKISTDLEVLSIAGALSEDNLTDGIVPTNSSLASRLFM-PNNAKVYMEDLQVGESAIHQTLHETSESIEKTHWFLEKSSPEKKEIKLISK |
| 3DS8 Chain:A ((2-254)) | --------------------------------------DQIPIILIHGSGGNASSLDKMADQLMNEYR---SSNEALTMTVNSEGKIKFEGKLTKDAKRPIIKFGFEQNQATPDDWSKWLKI-AMEDLKSRYGF-TQMDGVGHSNGGLALTYYAEDYAGDKTVPTLRKLVAIGSPFNDLDPNDNGMDLSFKKL--PNSTPQMDYFIKNQTEVSPDLEVLAIAGELSEDNPTDGIVPTISSLATRL-FMPGSAKAYIEDIQVGEDAVHQTLHETPKSIEKTYWFLEKFKTDETVIQLDYK |
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General information:
TITO was launched using:
| RESULT:
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Template: 3DS8.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -21953 for 2090 contacts (-10.5/contact) +
2D Compatibility (PS) -26150 + (NN) -14674 + (LL) 3296
1D Compatibility (HY) -18800 + (ID) 8250
Total energy: -86531.0 ( -41.40 by residue)
QMean score : 0.458
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