Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LKLVLMGLPGAGKGTQAEQIVEKYNIPHISTGDMFRAAMKNNTELGRKAKSFMDNGDLVPDEVTNGIVRERLSEDDAKDGFLLDGFPRTVEQAQELENILSDLGTELDAVINIDVEKDVLMKRLTGRWICRTCGKTYHEIYNPPKVPGKCDLDGGELYQRDDDKKETVEKRLNVNMKQTKPLLDFYSEKGKLHNINGEQEIKDVFVDVEKILASF
4TYQ Chain:A ((1-212))
MNIVLMGLPGAGKGTQAERIVAKYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVTIGIVRERLSKSDCERGFLLDGFPRTVAQAEALEEILEEMGRKLEYVIHIEVRQEELMERLTGRRICSVCGTTYHLVFNPPKTPGICDKDGGELYQRADDNEETVAKRLEVNMKQMAPLLAFYDSKEVLVNVNGQQDMEKVFKDLREIL---
General information:
TITO was launched using:
RESULT:
Template:
4TYQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -67325 for 1635 contacts (-41.2/contact) +
2D Compatibility (PS) -23453 + (NN) -16383 + (LL) 248
1D Compatibility (HY) -24000 + (ID) 7000
Total energy: -137913.0 ( -84.35 by residue)
QMean score : 0.598
(partial model without unconserved sides chains):
PDB file :
Tito_4TYQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4TYQ-query.scw
PDB file :
Tito_Scwrl_4TYQ.pdb
: