Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | VIRFFKIVTPILLSISLVACSSASGKTEKITAPIEKDRNLSMVVTTDVHYFAPSLTDNGKAFEKYVAAGDGKQLAYSDEITDAFLADVESKKTDVLIISGDLTNNGEKT--SHEELAKKLTQVEKNGTQVFVVPGNHDINNPWARKFEKDKQLPTDTISPTDFSKIYGDFGYEDAISSDEFSLSYLAAPS-SKVWLLMLDTAIYKTNMQQGNPTTEGGLTAGTLDWIKESSALAKKNGAKLIPVLHHNLTDHNDVIQKGYTINYNQQVIDALTEGAMDFSLSGHIHTQNIRSAKSTDGKEITDIVTNALSV-----------FPHKYGNITYSAKNKNFTYQSQKLDMEAWAKAQGSTDENLLNFDQFDYETFYNSGYDKAMMDLMTDESYDKYNQADKEKMADTMGLNNMYFFAGTAPPKSDGMALWDSAPNSFLKDYVLSSSNPPKKSNDYYVSP |
| 3AV0 Chain:A ((18-252)) | ------------------------------------GSHMMFVHIADNHLGYRQYNL-------------DDREKDIYDSFKLCIKKILEIKPDVVLHSGDLFNDLRPPVKALRIAMQAFKKLHENNIKVYIVAGNHEMPRRLGEE---------------SPLALLKDYVK-----ILDG--KDVINVNGEEIFICGTY-------------YHKKSKREEMLDKLKNFESEAK-NYKKKILMLHQGINPYIPL---------DYE-LEHFDLPKFSYYALGHIHKRILERFN----DG-ILAYSGSTEIIYRNEYEDYKKEGKGFYLVDFSGN-------------------------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3AV0.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -62735 for 1791 contacts (-35.0/contact) +
2D Compatibility (PS) -24175 + (NN) -11612 + (LL) 11448
1D Compatibility (HY) -9600 + (ID) 1650
Total energy: -98324.0 ( -54.90 by residue)
QMean score : 0.350
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