Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VILIIDHNDSFTYNLYQYFLELQEEVQVVSATSFSLEAFQQLAPEMVVLSPGPGSPEDF-PVSLALLGKI-QVPILGICLGHQIIGHFFGAKVVPANVPVHGKTSVISH-TGEGLFADLEPAFQVTRYHSLVIDPTTVPVNLKVTAVTEDGVIMGLVHATKPIHSVQFHPEAILSENGHAILKNFV-RLGRNVK
2VXO Chain:A ((31-226))
AVVILDAG--YGKVIDRRVRELFVQSEIFPLET-PAFAIKEQGFRAIIISGGP------APWFDPAIF-TIGKPVLGICYGMQMMNKVFGGTVHK-------V-FNISVDNTCSLFRGLQKEEVVLLTHGDSVD--KVADGFKVVARSGN-IVAGIANESKKLYGAQFHPEVGLTENGKVILKNFLYDIAG---
General information:
TITO was launched using:
RESULT:
Template:
2VXO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -159278 for 1402 contacts (-113.6/contact) +
2D Compatibility (PS) -17684 + (NN) -3399 + (LL) 60
1D Compatibility (HY) -8400 + (ID) 2350
Total energy: -191051.0 ( -136.27 by residue)
QMean score : 0.511
(partial model without unconserved sides chains):
PDB file :
Tito_2VXO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2VXO-query.scw
PDB file :
Tito_Scwrl_2VXO.pdb
: