Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVKMIVGLGNPGSKYNDTKHNIGFMAVDRIVKDLDVNFTEDKNFKAEIGSDFINGEKIYFIKPTTFMNNSGIAVKALLTYYNISIKDMIIIYDDLDMEVGKIRFRQKGSAGGHNGIKSIIAHLGTQ-EFDRIKVGIGRPNGRMTVINHVLGKFDKNDEIMILNTLDKVDNAVNYYLQTNDFQKTMQKYNGLK
4DJJ Chain:A ((4-193))
-VQLIVGLGNPGPEYDQTRHNAGALFVERLAHAQGVSLVADRKYFGLVGKFSHQGKDVRLLIPTTYMNRSGQSVAALAGFFRIAPDAILVAHDELDMPPGVAKLKTGGGHGGHNGLRDIIAQLGNQNSFHRLRLGIGHPGHSSLVSGYVLGRAPRSEQELLDTSIDFALGVLPEML-AGDWTRAMQKLHSQK
General information:
TITO was launched using:
RESULT:
Template:
4DJJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -107807 for 1544 contacts (-69.8/contact) +
2D Compatibility (PS) -19732 + (NN) -4648 + (LL) 328
1D Compatibility (HY) -10800 + (ID) 3250
Total energy: -145909.0 ( -94.50 by residue)
QMean score : 0.493
(partial model without unconserved sides chains):
PDB file :
Tito_4DJJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4DJJ-query.scw
PDB file :
Tito_Scwrl_4DJJ.pdb
: