Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMKKVLTFLLCSLYFVSIPAISTEEPLTLSQNRRYALTQTVVDKEMYFDAIPERPTTKIEISSFQDEALTITGETLVPNTLLSIVSLTINSNGIPVFTLSNGQFIKASREAIFNDLVSKQQSVSLDYWLKPSFVTYEAPYTNGVSEVKNNLKPYSRVHLVEQAETEHGIYYKTDSGFWISVEDLSVAD----NRMAKVQEVLLEKYNKDKYGIYIKQLNTQTVAGINIDRSMYSASIAKLATLYASQEQVKLGKLSLDSKFEYKDNVNQFPNSYDPSGSGKLEKKADHKLYTVKELLEATAKESDNVATNMLGYYVNNQYDSMFQTQVDTIS-GMHWDMKKRQISPQAAGKMMEAIYYQN------GDIVNYLSKTDFDNTRIPKNIP-VKVAHKIGDAYDYKHDAAIVYAEQPFIMIIFTDKSS----YDDITKIADDVYQVLK
3CJM Chain:A ((28-275))---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SANTVFFDKINDLLVASVKE--FEGTVGISYLDLETGEQRSVNGQHEFYTASTIKVPLTMLVADTVASGQKKWTDLIPYNAEED------YEEGTGIIAYN-IQPEYPLKTLQEYAITYSDNIAKNMLYDTLGGDA--KAKREMYQRYLHKTPSIEEPQFSSEDALVILQKLYTEKATKPDYQAIYDSMKQSVF-HERMETPTTQGKVAHKIGSYDEFIHDMGILETPHPFALAIFTKGPDNAKSAAFIASVTDKLWQLQV


General information:
TITO was launched using:
RESULT:

Template: 3CJM.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -76677 for 1948 contacts (-39.4/contact) +
2D Compatibility (PS) -24538 + (NN) -6573 + (LL) 13376
1D Compatibility (HY) -6800 + (ID) 2600
Total energy: -103812.0 ( -53.29 by residue)
QMean score : 0.390

(partial model without unconserved sides chains):
PDB file : Tito_3CJM.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-3CJM-query.scw
PDB file : Tito_Scwrl_3CJM.pdb: