Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKKVLTFLLCSLYFVSIPAISTEEPLTLSQNRRYALTQTVVDKEMYFDAIPERPTTKIEISSFQDEALTITGETLVPNTLLSIVSLTINSNGIPVFTLSNGQFIKASREAIFNDLVSKQQSVSLDYWLKPSFVTYEAPYTNGVSEVKNNLKPYSRVHLVEQAETEHGIYYKTDSGFWISVEDLSVAD----NRMAKVQEVLLEKYNKDKYGIYIKQLNTQTVAGINIDRSMYSASIAKLATLYASQEQVKLGKLSLDSKFEYKDNVNQFPNSYDPSGSGKLEKKADHKLYTVKELLEATAKESDNVATNMLGYYVNNQYDSMFQTQVDTIS-GMHWDMKKRQISPQAAGKMMEAIYYQN------GDIVNYLSKTDFDNTRIPKNIP-VKVAHKIGDAYDYKHDAAIVYAEQPFIMIIFTDKSS----YDDITKIADDVYQVLK |
3CJM Chain:A ((28-275)) | ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SANTVFFDKINDLLVASVKE--FEGTVGISYLDLETGEQRSVNGQHEFYTASTIKVPLTMLVADTVASGQKKWTDLIPYNAEED------YEEGTGIIAYN-IQPEYPLKTLQEYAITYSDNIAKNMLYDTLGGDA--KAKREMYQRYLHKTPSIEEPQFSSEDALVILQKLYTEKATKPDYQAIYDSMKQSVF-HERMETPTTQGKVAHKIGSYDEFIHDMGILETPHPFALAIFTKGPDNAKSAAFIASVTDKLWQLQV |
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General information:
TITO was launched using:
| RESULT:
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Template: 3CJM.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -76677 for 1948 contacts (-39.4/contact) +
2D Compatibility (PS) -24538 + (NN) -6573 + (LL) 13376
1D Compatibility (HY) -6800 + (ID) 2600
Total energy: -103812.0 ( -53.29 by residue)
QMean score : 0.390
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