Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MTRTVAIDIGGTMIKHGIVDNLGCIVEASELATEAYKGGPGILQKVCQIIDNYLT--EGSIDGIAISSAGMVDPDEGCIFYSGPQIPNYA-GTQFKKVLEDTYQVRTEIENDVNCAGLAEAVSGS-------------AKDSSIALCLTIGTGIGGCLIIDKTVFHGFSNSACEVGYMHLSD---GDFQDLASTTALIADVAKAHGDEISRWDGRRIFQEAK---EGN-EKCIASIDRMINYLGQGIANMVYVVNPEKVVLGGGIMAQKDYLQDKLSESLKRNLVTSLAEKTAIVFAQHENQAGMLGAYYHFKNRG |
| 3MCP Chain:A ((8-320)) | NRIVMTLDAGGTNFVFSAIQGGKEIADPVVLPACAD-CLDKCLGNLVEGFKAIQAGLPEAPVAISFAFPGPADYQAGIIGDL-PNFPSFRGGVALGPFLEDIFGIPVFINNDGSLFAYGEALTGVLPEINRRLREAGSTKRYKNLLGVTLGTGFGAGVVIDGELLRGDNAAGGYVWCLRNKKYPEYIVEESVSIRAVMRVYAERSGD-AGARTPKEIFEIAEGIRPGNREAAIAAFEELGEMAGDALASAITLID-GLIVIGGGLSGASKYILPVLLKEMNAQTGMM-----QKEVYDLDEEKSFAGFARGEAVEV |
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General information:
TITO was launched using:
| RESULT:
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Template: 3MCP.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -179087 for 2195 contacts (-81.6/contact) +
2D Compatibility (PS) -30021 + (NN) -8525 + (LL) 396
1D Compatibility (HY) -9600 + (ID) 2900
Total energy: -229737.0 ( -104.66 by residue)
QMean score : 0.366
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