Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIKFEHVSKVYGEKE----ALSDLTLSIKDGEIFGLIGHNGAGKTTTISILTSIIDATYGQVYIDDLLLTEHRD----QIKK-KIGYVPDSPDIFLNLTAEE-------YWYFLAKIYDVAPEDIEARITKLVDIFELEEQRYN-PIESFSHGMRQKVIVIGALLPNPDIWILDEPLTGLDPQASFDLKEMMKE-HAKNGKTVIFSTHVLAVAEQLCDRIGILKQGKLIFVGSLGELKMQYPDKDLETIYLELAGRQANREG
3TIF Chain:A ((1-223))
MVKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGA----MSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVA-RFGERIIYLKDGEVEREEKLR---------------------------
General information:
TITO was launched using:
RESULT:
Template:
3TIF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -139405 for 1579 contacts (-88.3/contact) +
2D Compatibility (PS) -22439 + (NN) -8653 + (LL) 2312
1D Compatibility (HY) -13200 + (ID) 3550
Total energy: -184935.0 ( -117.12 by residue)
QMean score : 0.463
(partial model without unconserved sides chains):
PDB file :
Tito_3TIF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3TIF-query.scw
PDB file :
Tito_Scwrl_3TIF.pdb
: