Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKVRKAVIPAAGLGTRFLPATKALAKEMLPIVDKPTIQFIVEEALKSGIEDILVVTGKSKRSIEDHFDSNFELEYNLKEKGKNELLKLVDETTG-IRLHFIRQSHPRGLGDAVLQAKAFVGNEPFV--VMLGDDLMDITNNKVIPLTKQLINDFEATHASTIAVMEVPHEDVSAYGVIAPQGEGVNG-LYSVNTFVEKPSPEEAPSNLAIIGRYLLTPEIFNILETQKPGAGNEIQLTDAIDTL-NKTQRVFARKFTGDRYDVGDKFGFMKTSIDYALQHP----QVKDDLKKYIIDLGKSLEKTSKK |
| 2PA4 Chain:B ((12-299)) | --VKTVVVPAAGLGTRFLPATKTVPKELLPVVDTPGIELIAAEAAELGATRLAIITAPNKAGVLAHFERSSELEETLMERGKTDQVEIIRRAADLIKAVPVTQDKPLGLGHAVGLAESVLDDDEDVVAVMLPDDL--VLPTGVMERMAQVRAEF---GGSVLCAVEVSEADVSKYGIFEIEADTKDSDVKKVKGMVEKPAIEDAPSRLAATGRYLLDRKIFDALRRITPGAGGELQLTDAIDLLIDEGHPVHIVIHQGKRHDLGNPGGYIPACVDFGLSHPVYGAQLKDAIKQILAEHEAAERI---- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2PA4.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -136867 for 2271 contacts (-60.3/contact) +
2D Compatibility (PS) -30479 + (NN) -16916 + (LL) 836
1D Compatibility (HY) -20000 + (ID) 5600
Total energy: -209026.0 ( -92.04 by residue)
QMean score : 0.488
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