Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MSIITDVYAREVLDSRGNPTLEVEVYTESGAFGRGMVPSGASTGEHEAVELRDGDKSRYGGLGTQKAVDNVNNVIAEAIIGYDVRDQQAIDRAMIALDGTPNKGKLGANAILGVSIAVARAAADYLEVPLYSYLGGFNTKVLPTPMMNIINGGSHSDAPIAFQEFMIMPVGAPTFKEALRWGAEVFHALKKILKERGLETAVGDEGGFAPKFEGTEDGVETILKAIEAAGYEAGENGIMIGFDCASSEFYDAERKVYDYSKFEGEGGAVRTAAEQIDYLEELVNKYPIITIEDGMDENDWDGWKALTERLGGRVQLVGDDFFVTNTDYLARGIKEEAANSILIKVNQIGTLTETFEAIEMAKEAGYTAVVSHRSGETEDSTIADIAVATNAGQIKTGSLSRTDRIAKYNQLLRIEDQLGEVAQYKGIKSFYNLKK |
4YWS Chain:B ((3-424)) | -TLIEAIVAREVLDSRGNPTIEVDVRLESGDVGRAIVPSG----------LRDGDKSRYNGKGVLKAVQAVNEDIAEALIGFDAADQIALDQELIALDGTPNKSKLGANAILGVSLAAAKAAAAAFGLPLYRYLGGVYAHVLPVPMMNIMNGGQHAT---DFQEFMIMPVGAESFREGLRWGAEIYHMLKKVIHDR--------EGGFAPSL-TNDAPLQLIMEAIEKAGYRPGEQ-IVIALDPATTEIF----Y---HLK-EGR-----SSAEMVDYWVDLVNRYPIISLEDGLAEDDWEGWALL-AKLGDRVQLVGDDFLVTNVQRLQRAIEAKAANSILIKLNQIGSLTETLSAIQLAQRSGWTAVVSHRSG-SEDVTIADLVVATNAGQIKTGAPA-TDRIAKYNQLLRIEEELGSAARYAGRSAFKV--- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4YWS.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -186457 for 3480 contacts (-53.6/contact) +
2D Compatibility (PS) -43079 + (NN) -25179 + (LL) 2432
1D Compatibility (HY) -41200 + (ID) 12300
Total energy: -305783.0 ( -87.87 by residue)
QMean score : 0.634
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