Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKTRSKLAAGFLTLMSVATLAACSGKTSNGTNVVTMKGDTITVSDFYDQVKTSKAAQQSMLTLILSRVFDTQYGDKVSDKKVSEAYNKTAKGYGNSFSSALSQAGLTPEGYKQQIRTTMLVEYAVKEAAKKELTEANYKEAYKNYTPETSVQVIKLDAE---------------------DKAKSVLKDVKADG-ADFAKIAKEKTTATD--KKVEY-KFDSAGTSLPKEVMSAAFKLDKNGVSDVVSTVDSTTYKTSYYIIKVTDKTEKKSDWKSYKNRLKEVILKDKTSDRSFQNKVISKALEKANVKIKDKAFAGILSQYATTSGSSSLKK |
| 3TC5 Chain:A ((57-166)) | ---------------------------------------------------------------------------------------------------------------------------------------------------RVRCSHLLVKHSQSRRPSSWRQEKITRTKEEALELINGYIQKIK-SGEEDFESLASQFSDCSSAKARGDLGAFSR--GQMQKPFEDASFALRTGEMSGPVFTDS------GIHIILRTE-------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3TC5.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -32149 for 606 contacts (-53.1/contact) +
2D Compatibility (PS) -9331 + (NN) -5491 + (LL) 14720
1D Compatibility (HY) -4800 + (ID) 800
Total energy: -37851.0 ( -62.46 by residue)
QMean score : 0.646
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