Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | ------------------------------MKKQFLKSAAILSLAVTAVSTSQPVAGITKDYNNRNEKVKKYLQENNFG--------------------HKIAYGWKNKVEFDFRYLLDTAKYLVNKEEFQD----PLYNDAREE----LISFIFPYE-----------KFLINN---RDITKLTVNQ---------YEAIVNRMSVALQKF----SKNIFEKQKVNKDLIPIAFWIEK--------SYRTVGTNEIAASVGI-QGGFYQNF-HDYYNYSYLLNSLWHE-----GNVKE----VVKDYENTIRQILSKKHEIEKILNQSTSDISIDDDDYE------KGNKELLREKLN-----IILNLSK-----RDYRVTPYYEVNKLHTGLILLEDVPNL-----KIAKDKLFSLEN-SLKEYKGEKV------NYEELRFNTEPLTSYLE-NKEKFLVP-----NIPYKNKLIL-REEDKYSFEDDEEEFGN-ELLSYNKLKNEVLPVN-ITTSTILKPFEQKKIVEDFNPYSNLDNLEIK--KIRLNGSQKQKV---------EQEKTKSPTPQKETVKEQTEQKVSGNTQEVEKKSETVATSQ-QSSVAQTSVQQPAPVQSVVQESKASQEEI----NAAHDAISAYKSTVNIANTAGVTTAEMTTLINT----QTSNLSDVEKALGNNKVNNGA--VNVLREDTARLENMIWNRAYQAIEEFNVARNTYNNQIKTE--TVPVDNDIEAILAGSQAKI---SHLDNRIGARHMDQAFVASL----LEVTEMSKSISSRIKE-- |
| 4CKB Chain:A ((1-844)) | MDANVVSSSTIATYIDALAKNASELEINNELELVFIKPPLITLTNVVNISTIQESFIRFTVTNKEGVKIRTKIPLSKVHGLDVKNVQLVDAIDNIVWEKKSLVTENRLHKECLLRLSTEERHIFLDYKKYGSSIRLELVNLIQAKTKNFTIDFKLKYFLGSGAQSKSSLLHAINHPKSRPNTSLEIEFTPRDNETVPYDELIKELTTLSRHIFMASPENVILSPPINAPIKTFMLPKQDIVGLDLENLYAVTKTDGIPITIRVTSNGLYCYFTHLGYIIRYPVKRIIDSEVVVFGEAVKDKNWTVYLIKLIENDRLEESKYVESKLVDICDRIVFKSKKYEGPFTTTSEVVDMLSTYLPKQPEGVILFYSKGPKSNIDFKIKKENTIDQTANVVFRMSSEPIIFGESSIFVEYKKFSNDKGFPKEYGSGKIVLYNGVNYLNNIYCLEYINTHNEVGIKSVVVPIKFIAEFLVNGEILKPRIDKTMKYINSEDYYGNQHNIIVEHLRDQSIKIGDINDKFRLNPEVTRGPLGILSNYVKTLLISMYCSKTFLDDSNKRKVLAIDFGNGADLEKYFYGEIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFYFGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVLITTMDGDKLSKLTDKKTFIIHKNLPSSENYMSVEKIADDRIVVYNPSTMSTPMTEYIIKKNDIVRVFNEYGFVLVDNVDFATIIERSKKFINGASTMEDRPSTRNFFELNRGAIKCEGLDVEDLLSYYVVYVFSKR |
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General information:
TITO was launched using:
| RESULT:
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Template: 4CKB.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 139850 for 4519 contacts (30.9/contact) +
2D Compatibility (PS) -65762 + (NN) 7288 + (LL) 0
1D Compatibility (HY) -31600 + (ID) 5450
Total energy: 44326.0 ( 9.81 by residue)
QMean score : 0.107
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