Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MITGIINLKKEAGMTSHDAVFKLRKILHTKKIGHGGTLDPDVVGVLPIAVGKATRVIEYMTESGKIYEGEITLGYATSTEDSSGEVISRTPLTQSDLSEDVVDHAMKSFTGPITQVPPMYSAVKVNGKKLYEYARSGEEVERPKRQITISEFRRTSPLYFEKGICRFSFYVSCSKGTYVRTLAVDLGIKLGYASHMSFLKRTSSAGLSITQSLTLEEINEKYK------Q-ED-FSFLLPIEYGVLDLPKVNLTEEDKVEISYGRRILLENEA---------DTLAA-FYENRVIAILEKRGNEFKPHKVLL |
2APO Chain:A ((65-321)) | -KYGVVVVDKPRGPTSHEVSTWVKKILNLDKAGHGGTLDPKVTGVLPVALERATKTIPMWHIPPKEYVCLMHLHR--------------------DASEEDILRVFKEFTGRIYQR----------------------------RIRKIHELELLDKD---G--KDVLFRVKCQSGTYIRKLCEDIGEALGTSAHMQELRRTKSGCFEEKDAVYLQDLLDAYVFWKEDGDEEELRRVIKPMEYGLRHLKKVVVKDSAVDAICHGADVYVRGIAKLSKGIGKGETVLVETLKGEAVAVGKALMNTKEILNADK |
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General information:
TITO was launched using:
| RESULT:
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Template: 2APO.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -121817 for 1781 contacts (-68.4/contact) +
2D Compatibility (PS) -23456 + (NN) -2554 + (LL) 2888
1D Compatibility (HY) -10800 + (ID) 3750
Total energy: -159489.0 ( -89.55 by residue)
QMean score : 0.422
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