Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-----MSYFRNYWYRFGAILFIILAVILLVFRPDWSMLHYLLYF------NFMALLAHQ-----FEEYQFPGGAS-----PIINYVV-----------YDEEELMDRFPGNTQSIMLVNTIAWLLYIASIAFPQAYWL----GLGVMFF-----SLTQLLGHGFQMNIKLKTWYNPGLATTVFLLVPIACAYIYQASAEGMLTWGDWLGGFIMLIVCVLTSIIAPVQLLKDKKTNYIISPWQMDRFHKVINFVRIKK
4F0D Chain:A ((2-271))
MGWAAAREAAGRDMLAADLRCSLFASALQSYKRDSVLRPFPASYARGDCKDFEALLADASKLPNLKELLQSSGDNHKRAWDLVSWILSSKVLTIHSAGKAEFEKIQKLTGAPHTPVPAPDFLFEIEYFDPANAKFYETKGERDLIYAFHGSRLENFHSIIHNGLHCH--KTSLFGEG----TYLTSDLSLALIYSPHGHG---WQHSLLGPILSCVAVCEVIDHP-------DKYFVVTNNQLLRVKYLLVYSQ---
General information:
TITO was launched using:
RESULT:
Template:
4F0D.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -217406 for 1417 contacts (-153.4/contact) +
2D Compatibility (PS) -21534 + (NN) -10211 + (LL) 2176
1D Compatibility (HY) -7600 + (ID) 1700
Total energy: -256275.0 ( -180.86 by residue)
QMean score : 0.094
(partial model without unconserved sides chains):
PDB file :
Tito_4F0D.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4F0D-query.scw
PDB file :
Tito_Scwrl_4F0D.pdb
: