Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MRVIKVKTISETLDYISKHTASVARFGDGEI-DIIAGNSIPYQVYDSELAKRLERLLNRQSNEKLVICVSDVFDNLGRYNDFSQQFWRDHLYQYNDLYQKNCQAEWYGSTFIS--RPYMDLLDKSLSVT--------YFEQLKALWKNKDILIVEG-ETSRSGVGNDLFNDANTISRIICPSKDAFSSFYEIKETILEHSRGKLILLMLGPTAKLLAEDLSQLGHQAIDLGHIDSEYEWFKMGAVSKVKLSHKHTAEHNFDEDITLIEDNSYENQIVSKIGTSDRQYALTVTLTDDIWELEHLLQRCPNTN---FHIAAPVYCSDR----LKQLVGYPNYYLHEAITEEQFEVLLLNSDIYL---DINHGEEVWNVVDRCITEGKTIYGIRRARKDNQYISFERTMD-DFEYLCDTIKQNR |
| 4J3R Chain:A ((4-383)) | --ATLPTTASSSTAVASSQLDQLANFAYNVTTDSVAGCTLQ-----NLRVRRDWRAFSKTQKKDYINSVLCLQKLPSRTPAHLAPGARTRYDDFVATHINQTQIIHYTGTFLAWHRYFIYEFEQALRDECSYTGDYPYWNWGADADNMEKSQVFDGSETSMSGNGEYIPNQGD-------------------------------IKLLLGNYPAIDLPPGS--GGGCVTSGPFKDY--KLNLGPAALSLPGGNMTAAANPLTYNPRCMKRSLTTEILQRYNTFPKIVELILD-SDDIWDFQMTMQGVPGSGSIGVHGGGHYSMGGDPGRDVYVSPGDTAFWLHHGMIDRVW-WIWQNLDLRKRQNAISGTGTFMNNPASPNTTLDTVIDLGYANGGP--IAMRDLMSTTAGPFCYVYL--- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4J3R.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -15246 for 2926 contacts (-5.2/contact) +
2D Compatibility (PS) -35774 + (NN) 3219 + (LL) 4104
1D Compatibility (HY) -4800 + (ID) 3150
Total energy: -51647.0 ( -17.65 by residue)
QMean score : 0.208
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