Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKDYINRILHFIKEHMTYHVNFIDDFLDIKWEKVS------NIHLRFWTTIIAYLVIFILSISTVILNLVLLFQGFLTQNPIIYLLFFITLVCAFYFAYKFITYTPTIVKNALQYIKKLKNV----
4OYD Chain:B ((1-117))
--ADPKKVLDKAKDQAENRVRELKQKLEELYKEARKLDLTQEMRRKLELRYIAAMLMAIGDIYNAIRQAKQEADKLKKAGLV-------NSQQLDELKRRLEELKEEASRKARDYGREFQLKLEYG
General information:
TITO was launched using:
RESULT:
Template:
4OYD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -124287 for 696 contacts (-178.6/contact) +
2D Compatibility (PS) -11072 + (NN) -5805 + (LL) 1388
1D Compatibility (HY) 4800 + (ID) 550
Total energy: -135526.0 ( -194.72 by residue)
QMean score : 0.509
(partial model without unconserved sides chains):
PDB file :
Tito_4OYD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4OYD-query.scw
PDB file :
Tito_Scwrl_4OYD.pdb
: