Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDSRPIGFLDSGVGGLTVVKEMFRQLPEEEVIFIGDQARAPYGPRPAQQIREFTWQMVNFLLTKNVKMIVIACNTATAVAWQEIKEKLDIPVLGVILPGASAAIKSTN--SGKVGIIGTPMTVKSDAYRQKIQALSPNTAVVSLACPKFVPIVESNQMSSSLAKKVVYETLSPLVGKLDTLILGCTHYPLLRPIIQNVMGAEVKLIDSGAETVRDISVLLNYFEINHNWQNKHGGHHFYTTASPKGFKEIAEQWLSQEINVERIVL
3UHO Chain:B ((25-270))
---MKIGVFDSGVGGLSVLKSLYEARLFDEIIYYGDTARVPYGVKDKDTIIKFCLEALDFFEQFQIDMLIIACNTASAYALDALRAKAHFPVYGVIDAGVEATIKALHDKNKEILVIATKATIKSEEYQKRLLS-QGYTNINALATGLFVPMVEEGIFEGDFLQSAM-EYYFKNITTPDALILACTHFPLLGRSLSKYFGDKTKLIHSGDAIVE----FLKERE-NIDLKNHKAKLHFYASSDVESLKNTAKIWLNLLRK------
General information:
TITO was launched using:
RESULT:
Template:
3UHO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -179889 for 2173 contacts (-82.8/contact) +
2D Compatibility (PS) -26262 + (NN) -10085 + (LL) 1512
1D Compatibility (HY) -22800 + (ID) 4250
Total energy: -241774.0 ( -111.26 by residue)
QMean score : 0.463
(partial model without unconserved sides chains):
PDB file :
Tito_3UHO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3UHO-query.scw
PDB file :
Tito_Scwrl_3UHO.pdb
: