Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSDIGIIVVSHSKNIAQGVVDLISEVA-KDVSITYVGGTEDGEIGTSFDQVQQI----VEQ-NDKKTLLAFFDLGSAKMNLELVADFSEKNIIINSVPVVEGAYTAAALLQAGADLDSIQSQLAELTINK
3GX1 Chain:A ((3-123))
-AQVEVIVMMHGRSTATSMVETVQELLSIE-SGIALD----MPLTVEVKAMYEKLKQTVVKLNPVKGVLILSDMGSLTSFGNILTEELGIRTKTVTMVSTPVVLEAMRKASLGRGLEDIYQSCEQLFENK
General information:
TITO was launched using:
RESULT:
Template:
3GX1.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -78231 for 895 contacts (-87.4/contact) +
2D Compatibility (PS) -12828 + (NN) -8159 + (LL) 308
1D Compatibility (HY) -4000 + (ID) 950
Total energy: -103860.0 ( -116.04 by residue)
QMean score : 0.481
(partial model without unconserved sides chains):
PDB file :
Tito_3GX1.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3GX1-query.scw
PDB file :
Tito_Scwrl_3GX1.pdb
: