Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKEILVLGAGYAGLKAVRNLQKQSGDFHITLVDMNDYHYEAT-ELHEVAAGSQPK-E-KITFPIKDVINTNKVNF-MQDEVLKVDAENKTVTVK-----NNGELHYDYVVVALGFVSETFGIKGAME-NALQMTNISQAENIHNHIVNTMKLYRETKDENLLKLLVCGAGFTGIELAGAMVDERPKYAALAGVKPEQIEIICVEAATRILPMFDDELAQYGVNLIKDLGINLMLGSMIKEIKPGE-----------------------VVYGTSKEDEELKSITAGTIIWTTGVSGSPVM-GESGFD-QRRGRVMVNSDLRDPKYDNVYVIGDVSAFMDTESGR-PFPTTAQIATRMGAHVAKNLLHQIKGEATEDFSYSPQGTVASVGNTHGLGVVGKTKIKKYPASVMKKIIMNKSLVDMGGLKELLAKGRFDLYH |
| 3NTD Chain:A ((1-338)) | MKKILIIGGVAGGASAAARARRLSETAEIIMFERGEYVSFANCGLPYHISGEIAQRSALVLQTPESFKARFNVEVRVKHEVVAIDRAAKLVTVRRLLDGSEYQESYDTLLLSPGAAPIVPPIPGVDNPLTHSLRNIPDMDRILQTIQM----------NNVEHATVVGGGFIGLEMMESLHHL-------------GIKTTLLELADQVMTPVDREMAGFAHQAIRDQGVDLRLGTALSEVS-YQVQTHVASDAAGEDTAHQHIKGHLSLTLSN--G---ELLETDLLIMAIGVRPETQLARDAGLAIGELGGIKVNAMMQT-SDPAIYAVGDAVEEQDFVTGQACLVPLAGPANRQGRMAADNMFGREERYQGTQGTAICKVFDLAVGATGKNEKQLKQAGIAFEKVYVHTASHASYYPGAEVVSFKLLFDPVKGTI |
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General information:
TITO was launched using:
| RESULT:
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Template: 3NTD.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -228730 for 2485 contacts (-92.0/contact) +
2D Compatibility (PS) -32758 + (NN) -10543 + (LL) 1880
1D Compatibility (HY) -9200 + (ID) 3400
Total energy: -282751.0 ( -113.78 by residue)
QMean score : 0.530
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