Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSTNKIAPSILAADYANFANELKRIEETTAEYVHIDIMDGQFVPNISFGADVVSSMRKHSKLVFDCHLMVVDPERYIEDFAQAGADIMTIHVEATK-HIHGALQKIKEAGMKAGVVINPGTPVESLIPILDL---VDQILIMTVNPGFGGQAFIPEMMSKVKTVAAWRKEYGHHYDIEVDGGIDNTTIKAAAEAGANVFVAGSYLFKASDLPAQVETLRVALDD
1H1Y Chain:B ((8-222))
----KIAPSMLSSDFANLAAEADRMVRLGADWLHMDIMDGHFVPNLTIGAPVIQSLRKHTKAYLDCHLMVTNPSDYVEPLAKAGASGFTFHIEVSRDNWQELIQSIKAKGMRPGVSLRPGTPVEEVFPLVEAENPVELVLVMTVEPGFGGQKFMPEMMEKVR---ALRKKY-PSLDIEVDGGLGPSTIDVAASAGANCIVAGSSIFGAAEPGEVISALRKSVEG
General information:
TITO was launched using:
RESULT:
Template:
1H1Y.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -181922 for 1860 contacts (-97.8/contact) +
2D Compatibility (PS) -23059 + (NN) -13166 + (LL) 368
1D Compatibility (HY) -23600 + (ID) 5300
Total energy: -246679.0 ( -132.62 by residue)
QMean score : 0.709
(partial model without unconserved sides chains):
PDB file :
Tito_1H1Y.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1H1Y-query.scw
PDB file :
Tito_Scwrl_1H1Y.pdb
: