Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIKSKILLQLMQGKIVAVIRGNSQEEAFQAAQACIKGGISAIEIAYTNSKASQVIEQLVTQYTNQEQVVVGAGTVLDSETARMAILAGAKFIVSPAFNLQTAKLCNRYAIPYLPGCMTLSEVTTALEAGCEIIKIFPGGTL-GTSFISSLKAPLPQVQIMVTGGVNLTNAKDWFLSGVTAIGIGGEFNKLAALGEFDKITEMAKQYKIQLNLN
2YW3 Chain:A ((7-201))
------LAVLAESRLLPLLTVRGGEDLLGLARVLEEEGVGALEITLRTEKGLEALKALRK-S----GLLLGAGTVRSPKEAEAALEAGAAFLVSPGLLEEVAALAQARGVPYLPGVLTPTEVERALALGLSALKFFPAEPFQGVRVLRAYAEVFPEVRFLPTGGIKEEHLPHYAALPNLLAVGGSWLLQ----GNLEAVRAKVRAAKALL---
General information:
TITO was launched using:
RESULT:
Template:
2YW3.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -170417 for 1653 contacts (-103.1/contact) +
2D Compatibility (PS) -21222 + (NN) -10985 + (LL) 1688
1D Compatibility (HY) -10000 + (ID) 2500
Total energy: -213436.0 ( -129.12 by residue)
QMean score : 0.625
(partial model without unconserved sides chains):
PDB file :
Tito_2YW3.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2YW3-query.scw
PDB file :
Tito_Scwrl_2YW3.pdb
: