Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQYPEPISKLIDSFMKLPGIGPKTAVRLAFFVLGMKEDVVLDFAKALVNAKRNLTYCSVCGHITDQDPCYICEDTRRDKSVICVVQDPKDVIAMEKMKEYNGQYHVLHGAISPMDGIGPEDIKIPELLKRLQDDQVTEVILATNPNIEGEATAMYISRLLKPSGIKLSRIAHGLPVGGDLEYADEVTLSKALEGRREL
4JCV Chain:D ((25-215))
---PPSLVSLIRELSRLPGIGPASAQALAFHLFEQPREDIERLASALLEAKRDLHVCPICFNITDAEKCDVCADPSRDQRTICVVEEPGDVIALERSGEYRGLYHVLHGVLSPMNGVGPDKLHIKPLLPRV--GQGMEVILATGTTVEGDATALYLQRLLEPLGAAISRIAYGVPVGGSLEYTDEVTLGRALTGRQ--
General information:
TITO was launched using:
RESULT:
Template:
4JCV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -116961 for 1214 contacts (-96.3/contact) +
2D Compatibility (PS) -21182 + (NN) -17313 + (LL) 744
1D Compatibility (HY) -19600 + (ID) 4900
Total energy: -179212.0 ( -147.62 by residue)
QMean score : 0.532
(partial model without unconserved sides chains):
PDB file :
Tito_4JCV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4JCV-query.scw
PDB file :
Tito_Scwrl_4JCV.pdb
: