Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRKKITLACKTCGNRNYTTMKSSAS-------AAERLEVKKYCSTCNSHTAHLETK
1EF4 Chain:A ((1-55))
MIPVRCLSCGKPVSAYFNEYQRRVADGEDPKDVLDDLGLKRYCCRRMLIS-HVETW
General information:
TITO was launched using:
RESULT:
Template:
1EF4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -8745 for 316 contacts (-27.7/contact) +
2D Compatibility (PS) -4629 + (NN) 2661 + (LL) 144
1D Compatibility (HY) -2800 + (ID) 500
Total energy: -13869.0 ( -43.89 by residue)
QMean score : 0.374
(partial model without unconserved sides chains):
PDB file :
Tito_1EF4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1EF4-query.scw
PDB file :
Tito_Scwrl_1EF4.pdb
: