Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPKVALYNQNGSTAGDIELNASVFGIEPNESVVFDAILMQRASLRQGTHKVKNRSEVRGGGRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTP-RSYSYKLPKKVRRLAIKSVLSSKVIDNNIIVLEDLTLDTAKTKEMAAILKGLSVEKKALIVTAD---ANEAVALSARNIPGVTVVEANGINVLDVVNHEKLLITKAAVEKVEEVLA
3J7Y Chain:F ((68-274))
----SLRGFEQERVGLADLHPDVFATAPRLDILHQVAMWQKNFKRISYAKTKTRAEVRGGGRKPWPQKGTGRARHGSIRSPLWRGGGVAHGPRGPTSYYYMLPMKVRALGLKVALTVKLAQDDLHIMDSLELPTGDPQYLTELAHYRRWGDSVLLVDLTHEEMPQSIVEATSRLKTFNLIPAVGLNVHSMLKHQTLVLTLPTVAFLEDKLL
General information:
TITO was launched using:
RESULT:
Template:
3J7Y.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -83807 for 1401 contacts (-59.8/contact) +
2D Compatibility (PS) -22180 + (NN) -14718 + (LL) 324
1D Compatibility (HY) -12000 + (ID) 3500
Total energy: -135881.0 ( -96.99 by residue)
QMean score : 0.503
(partial model without unconserved sides chains):
PDB file :
Tito_3J7Y.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3J7Y-query.scw
PDB file :
Tito_Scwrl_3J7Y.pdb
: