Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MHVKKGDKVMVISGKDKGKQGTILAAFPKKDRVLVEGVNMVKKHSKPTQ-ANPQGGISNQEAPIHVSNVMPLDPKTGEVTRVGYKVEDGKKVRVAKKSGQVLDK
5GAE Chain:V ((3-103))
AKIRRDDEVIVLTGKDKGKRGKVKNVLS-SGKVIVEGINLVKKHQKPVPALNQPGGIVEKEAAIQVSNVAIFNAATGKADRVGFRFEDGKKVRFFKSNSETI--
General information:
TITO was launched using:
RESULT:
Template:
5GAE.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -3816 for 613 contacts (-6.2/contact) +
2D Compatibility (PS) -10750 + (NN) -2862 + (LL) 52
1D Compatibility (HY) -7600 + (ID) 2250
Total energy: -27226.0 ( -44.41 by residue)
QMean score : 0.554
(partial model without unconserved sides chains):
PDB file :
Tito_5GAE.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-5GAE-query.scw
PDB file :
Tito_Scwrl_5GAE.pdb
: