Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MRLKCTISYDGHLFNGYQVQPG-KRTVQDELEKALAVLHKSKDRIPVVSSGRTDSGVHAAGQVIHFDTPLSIPAERWPYALNALLPDDIAVKQAEIADDGFHARFSAVKKEYRYFVYTEKHPDVFKRHYAYHFSYRLNVQDMREAAKHLIGTHDFTSFCAAKTEVQDKVRTIYELDWTE----TADGLQMRITGSGFLYNMVRIIAGTLLDAGIGKISPDEVKSMLEAKDREAAGRTAPGHGLYLWNVYYDN |
| 1VS3 Chain:A ((2-248)) | RRLLLLCEYDGTLFAGLQRQGRGLRTVQGELERALPGIGA---LPKAVAAGRTDAGVHALAMPFHVDVESAIPVEKVPEALNRLLPEDLKVVGAREVAPDFHARKDALWRAYRYRILVRPHPSPLLRHRALWVRRPLDLEAMEEALSLLLGRHNFLGFAKEET--RPGERELLEARLQVAEGEAGLEVRLYFRGKSFLRGQVRGMVGTLLEVGLGKRPPESLKAILKTADRRLAGPTAPAHGLYFVEAAYPE |
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General information:
TITO was launched using:
| RESULT:
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Template: 1VS3.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -134651 for 1986 contacts (-67.8/contact) +
2D Compatibility (PS) -25671 + (NN) -8682 + (LL) 256
1D Compatibility (HY) -14400 + (ID) 4750
Total energy: -187898.0 ( -94.61 by residue)
QMean score : 0.412
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