Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MRKTIFAFLTGLMMFGTITAASASPDSKNQTAKKPKVQTGIDTLLPDYKKQLKGKRIGLITNPAGVNTSLKSSVDILYENPDIKLT---ALFGPEHGVRGDAQAGDEVGSYIDEKTGVPVYSLYGKTKKPTPEMLKNVDILMFDIQDVGTRFYT--YIYTMAYAMEAAKENGIPFMVLDRPNPQGGNHIEGPILEPEYASFVGLYPIPLKHGMTIGELASLFNKEFSIDADLTVVKMKHWKRKMDFDDTRLPFVLPSPNMPTVESTFVYPATGLIEGTNISEGRGTTKPFELIGAPFIKSTELEETLNSLHLPGVTFRAASFTPTFSKHQGTLCHGVQLYVTDRDKFEAVKTGLSVIKTIHDLYPEDFEFLSTGSFDKLAGNGWIRTKIENGTSVENIINSYEKTLQQFSKTRKKYLIY |
1ELV Chain:A ((2-328)) | -----------------------------LDCGIPESIEN-----------------GKVEDPE--STLFGSVIRYTCEEPYYYMEGGGEYHCAGNGSWVNEVLGPELPKCVPVCGVPREPFIIGGSDADIKNFP---WQVFFDNPWAGGALINEYWVLTAAHVVEGNRE---PTMYVGSTSVQKMLTPEHVFIHPGWKLL------------------AVPEGRTNFDNDIALVRLK---DPVKMGPTVSPICLPGTS---SDYNLMDGDLGLISGWGRTEKRDRAVRLKAARLPVAPLRKCKEVAYVFT------------------PNMICAG---GEKGMDSCKGDSGGAFAVQDPND--KTKFYAAGLVSWGPQCGTYGLYTR------VKNYVDWIMKTMQENS--------- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 1ELV.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -15285 for 2503 contacts (-6.1/contact) +
2D Compatibility (PS) -31511 + (NN) -6102 + (LL) 7384
1D Compatibility (HY) -9600 + (ID) 2700
Total energy: -57814.0 ( -23.10 by residue)
QMean score : 0.268
|
|
|