Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKTKTLFIFSAILTLSIFAPNETFAQTAGNLIEPKIINAETAQFSTKKLRKVDQMIERDIA-AGFPGAVLVVVKDGRIIKKAAYGYSKKYEGSELLRRPAKMKTRTMFDLASNTKMYATNFALQRLVSQGKLDVYEKVSAYLPGFKDQPGDLIKGKDKIRVIDVLQHQSGLPSSFYFYTPEKAGKYYSQERDKTIEYLTKIPLDYQTGTKHVYSDIGYMLLGCIVEKLTGKPLDVYTEQELYKPLRLKHTLYNPLQKGFKPKQFAATERMGNTRDGVIQFPNIRTNTLQGEVHDEKAFYSMDGVSGHAGLFSNADDMAILLQVMLNKGSYRNISLFDQKTADLFTAPS--ATDPTFALGWRRNGSKSMEWMFGPHASENAYGHTGWT---GTVTIIDPAYNLGIALLTNKKHTPVIDPEENPNVFEGDQFPTGSYGSVITAIYEAME |
| 4GDN Chain:A ((7-332)) | -------------------------------------------LTNDSQQQIDKIIEHDLQKGHIPGASILIVKNGKVFLNKGYGYQDV-------DKKVKASPTTKYEIASNTKAFT-GLAILKLAQEGRLNLNDDVSKHVPHFKMNY---NGQNETITIKQLLAQTSGIPSDITSEDAVT---NKNNRLNDVTRAIMGDELHHKPGEEFEYSNMNYDLLGLIIQNVTKQSYTKYITNSWLKPLHMTHTSFKQTNNK--SKHDAI----GYELQGSTP-----------VVSKPE---FNLWDTPSAYMMTSTEDLEHWIKFQLNPPDK-YKSLVQQSHK-NLSSTIGEPNANAYASGWFTNN------------DEHLVFHSGTLDNFSSFILLNPKQNYGIVVLANLNSEYVPK------------------------------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 4GDN.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -78789 for 2720 contacts (-29.0/contact) +
2D Compatibility (PS) -33574 + (NN) -10834 + (LL) 7664
1D Compatibility (HY) -13200 + (ID) 3850
Total energy: -132583.0 ( -48.74 by residue)
QMean score : 0.432
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