Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNVNQNKKVLFLTDIENGLEPILQEATNTSAENMLTIQSYGASISHPYGEIMRSVIFAIYQEDVEEIFVVGTKDKKTSAGNGLTQLETMKDKIQTLDYLFQNCKPEFLGGTVDEWLN--ENSSDTIEKSVDMIRHHPLVPSYVKVRGLFVNHKGGKPSIAEVPDVKTGQAMPDHCLS
1G5C Chain:A ((21-169))
--LKHSPKLCIITCMDSRLIDLLERALGIGRGDAKVIKNAGNIVD---DGVIRSAAVAIYALGDNEIIIVGHTDCGMARLDED----LIVSRMRELGVE-----EEVIENFSIDVLNPVGDEEENVIEGVKRLKSSPLIPESIGVHGLIIDINTGRLKPLYLD--------------
General information:
TITO was launched using:
RESULT:
Template:
1G5C.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -63685 for 1055 contacts (-60.4/contact) +
2D Compatibility (PS) -15737 + (NN) -3821 + (LL) 1432
1D Compatibility (HY) -10800 + (ID) 1450
Total energy: -94061.0 ( -89.16 by residue)
QMean score : 0.499
(partial model without unconserved sides chains):
PDB file :
Tito_1G5C.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1G5C-query.scw
PDB file :
Tito_Scwrl_1G5C.pdb
: