Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKDEQMLTEWPSHLPWLNQS-QNDFTFPSDTYLLLYFWSMSCPN-CHQLTDKVL---QDIKD----MNVKVIGVHVPYIEEEKSMEVVLTYALDRGLAIPIVLDQN---YEIVTTCHVQGIP---------------SFCLLSQYGQIITKTMGDVGWDKMLKKIAGL
2GGT Chain:A ((2-158))
-----LGGPFS--LTTHTGERKTDKDY-LGQWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSITTLPDLTPLFISIDPER--DTKEAIANYVKEFSPKLVGLTGTREEVDQVARAYRVYYSPGPKDEDEDYIVDHTIIMYLIGPDGEFLDYFGQNKRKGEIAASIAT-
General information:
TITO was launched using:
RESULT:
Template:
2GGT.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -116940 for 939 contacts (-124.5/contact) +
2D Compatibility (PS) -13978 + (NN) -4161 + (LL) 680
1D Compatibility (HY) -3200 + (ID) 950
Total energy: -138549.0 ( -147.55 by residue)
QMean score : 0.597
(partial model without unconserved sides chains):
PDB file :
Tito_2GGT.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2GGT-query.scw
PDB file :
Tito_Scwrl_2GGT.pdb
: