Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMTHTVPQNMKAAVMHNTRE-IKIETLPVPDINHDEVLIKVMAVGICGSDLHYYTNGRIGNYVVEK--PFILGHECAGEIAAVGSSVDQFKVGDRVAVEPGV--TCGRCEACKEGRYNLCPDVQFLATPPVDGAFVQYIKMRQDFVFLIPDSLSYEEAALIEPFSVGIHAAAR-TKLQPGSTIAIMGMGPVGLMAVAAAKAFGAGTIIVTDLEPLRLEAAKKMGATHIINIREQDALEEIKTITNDRGVDVAWETAGNPAALQSALASVRRGGKLAIVGLPSQNEIPLNVPFIADNEIDIYG-IFRYANTYPKGIEFLASGIVDTKHLVTDQYSLEQTQDAMERALQFKNECLKVMVYPNR
1RJW Chain:D ((1-325))--------MKAAVVEQFKEPLKIKEVEKPTISYGEVLVRIKACGVCHTDLH----AAHGDWPVKPKLPLIPGHEGVGIVEEVGPGVTHLKVGDRVGI-PWLYSACGHCDYCLSGQETLC-EHQKNAGYSVDGGYAEYCRAAADYVVKIPDNLSFEEAAPIFCAGVTTYKALKVTGAKPGEWVAIYGIGGLGHVAVQYAKAMGL-NVVAVDIGDEKLELAKELGADLVVNPLKEDAAKFMKEKVG--GVHAAVVTAVSKPAFQSAYNSIRRGGACVLVGLPPE-EMPIPIFDTVLNGIKIIGSIVGTRKDLQEALQFAAEGKVKT---IIEVQPLEKINEVFDRMLK--------------


General information:
TITO was launched using:
RESULT:

Template: 1RJW.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain D - contact count / total energy / energy per contact / energy per residue : 1865 -251521 -134.86 -790.94
target 2D structure prediction score : 0.57
Monomeric hydrophicity matching model chain D : 0.77

3D Compatibility (PKB) : -134.86
2D Compatibility (Sec. Struct. Predict.) : 0.57
1D Compatibility (Hydrophobicity) : 0.77
QMean score : 0.524

(partial model without unconserved sides chains):
PDB file : Tito_1RJW.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-1RJW-query.scw
PDB file : Tito_Scwrl_1RJW.pdb: