Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMHTVTQTSLYGKDLLTLKDLSEEDINALLAEAGELKQN--------KIQPIFHGKTLAMIFEKSSTRTRVSFEAGMAQLGGSALFLSQKDLQLGRGETVADTAKVLSGYVDAIMIRTFEHEKVEELAKEADIPVINGLTDKYHPCQALADLLTIKEIKGK-------LKGVKVAYIGDGNNVAHSLMIGCAKMGCDISIASPKGYEVLDEAAEAAKTY--ALQSGSSVTLTDDPIEAVKDADVIYSDVFTSMGQEAEEQERLAVFAPYQVNAALVSH--AKPDYTFLHCLPAHREEEVTAEIIDGPNSAVFQQAENRLHVQKALLKA-ILYKGESSKNC
3SDS Chain:C ((24-351))-----------RHLLSIADLTPTEFATLVRNASSYKKTIKSDSMPERLTGALSGKTVAMMFSKRSTRTRVSTEGAVVKMGGHPMFLGKDDIQLGVNESLYDTSVVISSMVSCIVARV--HSDIANLAKHSSVPVINALCDTFHPLQAIADFLTIHESFA-THPSSLGLEGLKIAWVGDANNVLFDLAIAATKMGVNVAVATPRGYEIPSHIVELIQKAREGVQSPGNLTQTTVPEVAVKDADVIVTDTW--------KIKRLEAFKDFKVTSELAKRGGAKENWKFMHCLPRH-PEEVSDEVFYSERSLVFPEAENRLWAAISALEAFVVNKGK-----


General information:
TITO was launched using:
RESULT:

Template: 3SDS.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain C - contact count / total energy / energy per contact / energy per residue : 1545 -185469 -120.04 -637.35
target 2D structure prediction score : 0.72
Monomeric hydrophicity matching model chain C : 0.81

3D Compatibility (PKB) : -120.04
2D Compatibility (Sec. Struct. Predict.) : 0.72
1D Compatibility (Hydrophobicity) : 0.81
QMean score : 0.608

(partial model without unconserved sides chains):
PDB file : Tito_3SDS.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-3SDS-query.scw
PDB file : Tito_Scwrl_3SDS.pdb: