Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequence--------MDKTSLIGIILAFVALSVGMVLKGV-------------SFSALANPAAILI---IIAGTISAV------VIAFPTKEIKKVPTLFRVLFKENKQLT-----IEEL---IPMFSEWA-----QLARREGLLALEASI---------EDVDDAFLKNGLSMAVDGQSAEFIRDIMTEE---VEAMEDRHQAGAAIF-TQAGTYAPTLGVLGAVIGLIAALSHMDNTDELGHAISA-----AFVATLLGIFTG--YVLW--HPF-------------------ANKLKRKSKQEVKLR--EVMIEGVLS-------VLEGQAPKVIEQKLLMYLPAKDRLKFAEQGEAQNGEKKEEEA----------------------------
4NZR Chain:M ((26-416))NDGSYQSEIDLSGGANFREKFRNFANELSEAITNSPKGLDRPVPKTEISGLIKTGDNFITPSFKAGYYDHVASDGSLLSYYQSTEYFNNRVLMPILQTTNGTLMANNRGYDDVFRQVPSFSGWSNTKATTVSTSNNLTYDKWTYFAAKGSPLYDSYPNHFFEDVKTLAIDAKDISALKTTIDSEKPTYLIIRGLSGNGSQLNELQLPESVKKVSLYGDYTGVNVAKQIFANVVELEFYSTSKANSFGFNPLVLGSKTNVIYDLFASKPFTHIDLTQVTLQNSDNSAIDANKLKQAVGDIYNYRRFERQFQGYFAGGYIDKYLVKNVNTNKDSDDDLVYRSLKELNLHLEEAYREGDNTYYRVNENYYPGASIYENERASRDSEFQNEILKR


General information:
TITO was launched using:
RESULT:

Template: 4NZR.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain M - contact count / total energy / energy per contact / energy per residue : 1143 -77103 -67.46 -285.56
target 2D structure prediction score : 0.35
Monomeric hydrophicity matching model chain M : 0.66

3D Compatibility (PKB) : -67.46
2D Compatibility (Sec. Struct. Predict.) : 0.35
1D Compatibility (Hydrophobicity) : 0.66
QMean score : 0.071

(partial model without unconserved sides chains):
PDB file : Tito_4NZR.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-4NZR-query.scw
PDB file : Tito_Scwrl_4NZR.pdb: