Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMRYRAVFPMLIIVFALSGCTLSTINPMKKSRIDNIHHTQILFFSDENQ--IDQEAPYYDALLDLEKDYPEQIDKMKVYDKKE-----------------------GWEDEIETVPTLMVV-DQRHVVVKIEGCVKKKEDIIKPLQHVLSK
4FYB Chain:B ((97-209))-----------------------------------DKYMLLVFGRNGCSYCERFKKDLKNVKELRDYIKEHFSAYYVNISYSKEHDFKVGDKNNEKEIKMSTEELAQIYAVQSTPTIVLSDKTGKTIYELPG-YMPSTQFLAVLEFIGD-


General information:
TITO was launched using:
RESULT:

Template: 4FYB.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain B - contact count / total energy / energy per contact / energy per residue : 342 -50715 -148.29 -582.93
target 2D structure prediction score : 0.45
Monomeric hydrophicity matching model chain B : 0.62

3D Compatibility (PKB) : -148.29
2D Compatibility (Sec. Struct. Predict.) : 0.45
1D Compatibility (Hydrophobicity) : 0.62
QMean score : 0.592

(partial model without unconserved sides chains):
PDB file : Tito_4FYB.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-4FYB-query.scw
PDB file : Tito_Scwrl_4FYB.pdb: