Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMNEIAEVLPESMKNALSEIPEQQWLEIEEVRIRINRPVELIRRGQPVY-LSYAGTAEDAHLILSRLSNYSMYTLE--EELKKGYVTIRGGHRVGLAGRVITENG-GVKGLRDIASFNIRIARQK-LGI-A----------------------EPLLPYLYQN--SWLNTLIIGPPQTGKTTLLRDLARLSSTGKKNMLPVKTGIVDERSEIAGCLR-GIPQHQFGQRIDVLDACPKAEGLMMMIRSMSPEVMIVDEIGRMEDTDALLEALHAGVS-VIVSAHGWSISDLMKRPSLKRLWE---------------ERAFDRYLELSRAK---GPGTVSQIYDKDGNVLSRTTGVKTC
2GZA Chain:A ((33-346))---------------------LDDPQITEVCVNRPGEVFCERASAWEYYAVPNLDYEHLISLGTATARFVDQDISDSRPVLSAIL--PMGERIQIVRPPACEHGTISVTIRKPSFTRRTLEDYAQQGFFKHVRPMSKSLTPFEQELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQ------RLITIEDVPELFLPDHPNHVHLFYP--------VTAATLLRSCLR-MKPTRILLAELRGGE-AYDFINVAASGHGGSITSCHAGSCELTFERLALMVLQNRQGRQLPYEIIRRLLYLVVDVVVHVHNGVHDGTGRHISEVWYD--------------


General information:
TITO was launched using:
RESULT:

Template: 2GZA.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1125 -9858 -8.76 -38.81
target 2D structure prediction score : 0.50
Monomeric hydrophicity matching model chain A : 0.63

3D Compatibility (PKB) : -8.76
2D Compatibility (Sec. Struct. Predict.) : 0.50
1D Compatibility (Hydrophobicity) : 0.63
QMean score : 0.356

(partial model without unconserved sides chains):
PDB file : Tito_2GZA.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-2GZA-query.scw
PDB file : Tito_Scwrl_2GZA.pdb: