Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMNNEPVKRGKKNRWELNLPIMTYVVADDWIDKLGRETFTLWLRFHTWVDREDELRDYDRIPRSFENIYKKTLGISKSKFYRLIKPLWEYGLIDIIEYEESNRNSTKPKNIIVYEYPLHEIERKYKPLEKLRDWDKDYNSVSKELGKTGGRPRKKDSEEEPEKKPEEVTKKKRKYKLKRVIHNGFKNETVEGFKNETVEGFKNETVTVSKIKPNNYSNIFNNLSNISTNVSNNLLIDDDEEIENEPTGRTINRSLLFSQEDIKQAYQFINRFSVIQLRENFSFDKHFEERLVCYLWKAGISTFYTHEISKMIKKIADYEKSKKGRLNPIRDRALYMVNGLVMNRASSQSEHATYKLNQYKKQKEQEKQQQEQQRSRVPFYNWLEEREEQTEGQLPTT
2CYY Chain:A ((22-54))-------------------------------------------------------------APLREIS-KITGLAESTIHERIRKLRESGVIKKF-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------


General information:
TITO was launched using:
RESULT:

Template: 2CYY.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 54 -11553 -213.94 -350.09
target 2D structure prediction score : 0.76
Monomeric hydrophicity matching model chain A : 0.61

3D Compatibility (PKB) : -213.94
2D Compatibility (Sec. Struct. Predict.) : 0.76
1D Compatibility (Hydrophobicity) : 0.61
QMean score : 0.846

(partial model without unconserved sides chains):
PDB file : Tito_2CYY.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-2CYY-query.scw
PDB file : Tito_Scwrl_2CYY.pdb: