Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRILVVDNYDSFVFNLVQYLGQLGIEAEVWRNDDHRLSDEAAVAGQFDGVLLSPGPGTPERAGASVSIVHACAAAHTPLLGVCLGHQAIGVAFGATVDRAPELLHGKTSSVFHTNVGVLQGLPD--------PFTATRYHSLTILPKSLPAVLRVTARTSSGVIMAVQHTGLPIHGVQFHPESILTEGGHRILANWL-TCCGWTQDDTLVRRLENEVLTAISPHFPTSTASAGEATGRTSA
1GPM Chain:A ((8-239))
HRILILDFGSQYTQLVARRVRELGVYCELWAWDVTEAQ-I--RDFNPSGIILSGGPESTTEENS-PRAPQYVFEAGVPVFGVCYGMQTMAMQLGGHVEASNEREFGYAQVEVVNDSALVRGIEDALTADGKPLLDVWMSHGDKVT--AIPSDFITVASTESCPFAIMANEEKRFYGVQFHPEVTHTRQGMRMLERFVRDICQCEALWTPAKIIDDA-------------------------
General information:
TITO was launched using:
RESULT:
Template:
1GPM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -137031 for 1737 contacts (-78.9/contact) +
2D Compatibility (PS) -21204 + (NN) -4976 + (LL) 1304
1D Compatibility (HY) -6800 + (ID) 2250
Total energy: -170957.0 ( -98.42 by residue)
QMean score : 0.419
(partial model without unconserved sides chains):
PDB file :
Tito_1GPM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1GPM-query.scw
PDB file :
Tito_Scwrl_1GPM.pdb
: