Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MTTRLQAPVAVTPPLPTRRNAELLLLCFAAVITFAALLVVQANQDQGVPWDLTSYGLAFLTLFGSAHLAIRRFAPYTDPLLLPVVALLNGLGLVMIHRLDLVDNEIGEHRHPSANQQMLWTLVGVAAFALVVTFLKDHRQLARYGYICGLAGLVFLAVPALLPAALSEQNGAKIWIRLPGFSIQPAEFSKILLLIFFSAVLVAKRGLFTSAGKHLLGMTLPRPRDLAPLLAAWVISVGVMVFEKDLGASLLLYTSFLVVVYLATQRFSWVVIGLTLFAAGTLVAYFIFEHVRLRVQTWLDPFADPDGTGYQIVQSLFSF-----ATGGIFGTGLGNGQPDTVPAASTDFIIAAFGEELGLVGLTAILMLYTIVIIRGLRTAIATRDSFGKLLAAGLSSTLAIQLFIVVGGVTRLIPLTGLTTPWMSYGGSSLLANYILLAILARISHGARRPLRTRPRNKSPITAAGTEVIERV- |
3AQB Chain:B ((5-325)) | ---------------------SYKAFLNPYIIEVEKRLYECIQSDS-------------ETINKAAHHILSSGGKRVRPMFVLLSGFLND-------------------TQKDDLIRTAVSLELVHMASLVHDDYIDNSDMRRGNT----------SVHIAFDKDTAIRTGHFLLAR--ALQNIATINNSKFHQIFSKTILEVCFGEFDQMA--------------------------------DRFNYPVSFTAYLRRINRKT---------AILIEASCHLGALSSQ-LDEQSTYHIKQFGHCIGMSYQIIDDILDYTSDEATLGKPVGSDIRNGHI-------------------------------TYPLMAAIANLKEQDDDKLEAVVKHLTSTSDDEVYQYIVSQVKQYGIEPAELLSRKYGDKAKYHLSQL----------------QDSNIKDYLEEIHEKMLKRVY |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 3AQB.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -217783 for 2597 contacts (-83.9/contact) +
2D Compatibility (PS) -32082 + (NN) -1757 + (LL) 12292
1D Compatibility (HY) -4800 + (ID) 2450
Total energy: -246580.0 ( -94.95 by residue)
QMean score : 0.226
|
|
|