Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MAFDAAMSTHEDLLATIRYVRDRTGDPNAWQTGLTPTEVTAVVTSTTRS--EQLDAILRKI--RQRHSNLYYPAPPDREQGDAARAIADAEAALAH-------QNSATAQLDLQVVSAILNAHLKTVEGGESLHELQQEIEAAVRIRSDLDTPAGARDFQRFLIGKLKDIREVVATASLDAASKSALMAAWTSLYDASKGDR--GDADDRGPASVGSGGAPARGAGQQPELPTRAEPDCLLDSLLLEDPGLLADDLQVPGGTSAAIPSASSTPSLPNLGGATMPGGGATPALVPGVSAPGGLPLSGLLRGVGDEPELTDFDERGQEVRDPADYE----HSNEPDERRADDREGADEDAGLGKSESPPQAPTTVTLP-NGETVTAASPQLAAAIKAAASGTPIADAFQQQGIAIPLPGTAVANPVDPARISAGDVGVFTATPLPLALAKLFWTARFNTSQPCEGQTF- |
2IQH Chain:A ((21-489)) | NATEIRASVGKMIDGIGRFYIQMCTELKLSDYEGRLIQNSLTIERMVLSAFDTGGPIYRRVDGKWRRELILYDKEEIRRIWRQANNGDDATAGLTHMMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVK-----GVGTMVMELIRMIKRGINRRTRIAYERMCNILKGKFQTAAQRTMVDQVRESRNPGNAEFEDLIFLARSALILRGSVAHK----SCLPACVYGSAVASGYDFEREGYSLVGIDPFRLLQNSQVYSLIRPNENPAHKSQLVWMACHS-AAFEDLRVSSFIRGTKVVPR-GKLSTRGVQIASNENMETMESSTLELRSRYWAIRTRSGGNTSSGQISIQPTFSVQRNLPFDRPTIMAASDMRTEIIRLMESARPEDVSFQGRGV-FELSDEKATSPIVP---------------------------SFDMSN--EGSYFF |
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General information:
TITO was launched using:
| RESULT:
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Template: 2IQH.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 88613 for 3107 contacts (28.5/contact) +
2D Compatibility (PS) -42584 + (NN) -11779 + (LL) 3164
1D Compatibility (HY) -8000 + (ID) 3750
Total energy: 25664.0 ( 8.26 by residue)
QMean score : 0.149
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