Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAGDTTITIVGNLTADPELRFTPSGAAVANFTVASTPRIYDRQTGEWKDGEALFLRCNIWREAAENVAESLTRGARVIVSGRLKQRSFETREGEKRTVIEVEVDEIGPSLRYATAKVNKASRSGGFGSGSRPAPAQTSSASGDDPWGSAPASGSFGGGDDEPPF
4DAM Chain:A ((1-112))
-MNEIMICAVGNVATTPVFRDLANG-PSVRFRLAVTARYWDREKNAWTDGHTNFFTVWANRQLATNASGSLAVGDPVVVQGRLKVRTDVR-EGQSRTSADIDAVAIGHDLARGTA-------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
4DAM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -58381 for 712 contacts (-82.0/contact) +
2D Compatibility (PS) -12091 + (NN) -3602 + (LL) -560
1D Compatibility (HY) -3200 + (ID) 1950
Total energy: -79784.0 ( -112.06 by residue)
QMean score : 0.561
(partial model without unconserved sides chains):
PDB file :
Tito_4DAM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4DAM-query.scw
PDB file :
Tito_Scwrl_4DAM.pdb
: